install Shiny Server :: Ubuntu

Published onesixx on

http://statkclee.github.io/raspberry-pi/iot-rstudio-shiny.html
https://www.r-bloggers.com/deploying-your-very-own-shiny-server/
http://docs.rstudio.com/shiny-server/
https://www.rstudio.com/products/shiny/download-server/ – 다운로드 

Open Source Shiny Server는 한 서버에 여러개의 Shiny application을 hosting할수 있는 platform을 제공한다.
building on non-supported distributions , Administrator’s Guide 을 참조

설치 전 확인 

1. R 설치 확인

R는 당연히 설치되어 있어야 한다. 

⇒  R --version

2. Shiny package 설치

(Shiny 서버 설치전) R에 Shiny 팩키지 설치

Ubuntu

방법1

sudo R
> .libPaths()
[1] "/usr/local/lib/R/site-library" 
[2] "/usr/lib/R/site-library"      
[3] "/usr/lib/R/library"

> install.packages('shiny', lib=.libPaths()[1])

방법2

sudo su - -c "R -e \"install.packages('shiny', repos='https://cran.rstudio.com/', lib=.libPaths()[3])\""
Installing package into ‘/usr/lib/R/library’
(as ‘lib’ is unspecified)
also installing the dependencies ‘Rcpp’, ‘httpuv’, ‘mime’, ‘jsonlite’, ‘xtable’, 
‘digest’, ‘htmltools’, ‘R6’, ‘sourcetools’

 방법3 (local)

$ sudo su - -c "R -e \"install.packages('shiny', repos='https://cran.rstudio.com/')\""

 cf. HTTPS에 문제가 있는 경우 CRAN mirror를 사용

$ sudo su - -c "R -e \"install.packages('shiny', repos='http://cran.nexr.com/')\""

 확인

3. rMarkdown package 설치(option)

$ sudo su - -c "R -e \"install.packages('rmarkdown', repos='http://cran.nexr.com/')\""

 

Shiny server 설치

https://www.datascienceriot.com/install-shiny-server-for-r-on-ubuntu-the-right-way/kris/
https://www.rstudio.com/products/shiny/download-server/ – 다운로드 

다운로드 

deb파일 실행으로 위해 gdebi-core를 먼저 설치하고,

$ sudo apt-get install gdebi-core

보안으로 인해 다운이 안될 경우, -no-check-certificate 옵션을 맨뒤 사용.

$ sudo wget https://download3.rstudio.org/ubuntu-12.04/x86_64/shiny-server-1.5.4.869-amd64.deb

설치

다운받은 deb파일 실행하여 설치 

$ sudo gdebi shiny-server-1.5.1.834-amd64.deb
Reading package lists... Done
Building dependency tree        
Reading state information... Done
Reading state information... Done

Shiny Server
 Shiny Server is a server program from RStudio, Inc. that makes Shiny applications available over the web. Shiny is a web application framework for the R statistical computation language.
Do you want to install the software package? [y/N]:y
Selecting previously unselected package shiny-server.
(Reading database ... 290828 files and directories currently installed.)
Preparing to unpack shiny-server-1.5.1.834-amd64.deb ...
Unpacking shiny-server (1.5.1.834) ...
Setting up shiny-server (1.5.1.834) ...
Creating user shiny
Adding LANG to /etc/systemd/system/shiny-server.service, setting to en_US.UTF-8
Created symlink from /etc/systemd/system/multi-user.target.wants/shiny-server.service 
                  to /etc/systemd/system/shiny-server.service.
● shiny-server.service - ShinyServer
   Loaded: loaded (/etc/systemd/system/shiny-server.service; enabled; vendor preset: enabled)
   Active: active (running) since 수 2017-01-25 16:27:24 KST; 30ms ago
  Process: 25797 ExecStartPost=/bin/sleep 3 (code=exited, status=0/SUCCESS)
 Main PID: 25800 (shiny-server)
   CGroup: /system.slice/shiny-server.service
           ├─25795 /bin/bash -c /opt/shiny-server/bin/shiny-server --pidfile=/var/run/shiny-server.pid >> /v...
           └─25800 /opt/shiny-server/ext/node/bin/shiny-server /opt/shiny-server/lib/main.js --pidfile=/var/...

 1월 25 16:27:21 eos systemd[1]: Starting ShinyServer...
 1월 25 16:27:24 eos systemd[1]: shiny-server.service: Supervising process 25800 which is not our chil...xits.
 1월 25 16:27:24 eos systemd[1]: Started ShinyServer.
Hint: Some lines were ellipsized, use -l to show in full.

설치 확인

$ sudo systemctl status shiny-server

http://localhost:3838/
http://192.168.56.1:3838/sample-apps/hello/

https://www.datascienceriot.com/install-shiny-server-for-r-on-ubuntu-the-right-way/kris/

sudo chmod -R 777 /srv

 

Configure

/etc/shiny-server       shiny-server.conf

# Instruct Shiny Server to run applications as the user "shiny"
run_as sool;

# Define a server that listens on port 3838
server {
  listen 3838;

  # Define a location at the base URL
  location / {

    # Host the directory of Shiny Apps stored in this directory
    site_dir /srv/shiny-server;

    # Log all Shiny output to files in this directory
    log_dir /var/log/shiny-server;

    # When a user visits the base URL rather than a particular application,
    # an index of the applications available in this directory will be shown.
    directory_index on;
  }
}

/etc/shiny-server       shiny-server1.conf

    listen 3838;
    # Log all Shiny output to files in this directory
    log_dir /var/log/shiny-server1;

/etc/shiny-server       shiny-server2.conf   ……

    listen 4848;
    # Log all Shiny output to files in this directory
    log_dir /var/log/shiny-server2;

/etc/shiny-server       shiny-server6.conf   ……8888

 

Install Dependencies and Packages Needed by Shiny Server

We’re going to need the devtools package,
which means we need to install the libraries upon which it depends first (libcurl and libxml2):

$ sudo apt-get -y build-dep libcurl4-gnutls-dev
$ sudo apt-get -y install libcurl4-gnutls-dev
$ sudo apt-get -y build-dep libxml2-dev
$ sudo apt-get -y install libxml2-dev

Shiny server 관리

systemctl stop shiny-server.service 2>/dev/null 
systemctl start shiny-server.service

 

RHOME link만들기

⇒ sudo ln -s /Users/onesixx/Dropboox/RHome/    /srv/shiny-server/rhome 

http://10.144.66.114/shiny/index.html

http://10.144.66.114/shiny/rhome/

 

?

/opt/shiny-server/bin/deploy-example

#!/bin/bash

if [ "$(id -u)" != "0" ]; then
  echo "You must be root to run this script."
  exit 1
fi

if [ $# -gt 0 ]; then
  CONF=$1

  if [ $CONF == "shiny-server-rules" ]; then
    echo "shiny-server-rules is not a valid configuration."
    exit 1
  fi

else
  # No arguments passed. Use the default.
  CONF="default"
fi

echo "Attempting to deploy configuration named: $CONF"
FILE="/opt/shiny-server/config/$CONF.config"
if [ ! -f $FILE ]; then
  echo "ERROR: There is no configuration named: $CONF"
  exit 1
fi

SSCONF="/etc/shiny-server/shiny-server.conf"

# Restart
restart_shiny () {
  echo "Restarting Shiny Server..."
  INIT_SYSTEM=`cat /proc/1/comm`
  if test $INIT_SYSTEM = "systemd"
  then
    systemctl stop shiny-server.service 2>/dev/null
    echo "Waiting..."
    systemctl start shiny-server.service
  elif test -d /etc/init/
  then
    initctl stop shiny-server 2>/dev/null
    echo "Waiting..."
    initctl start shiny-server
  else
    /sbin/service shiny-server stop 2>/dev/null
    echo "Waiting..."
    sleep 5
    /sbin/service shiny-server start
  fi
  echo
  echo "The $CONF config is all setup now. Enjoy!"
}

copy_config () {
  /bin/cp -f $1 $SSCONF
  echo "Copied $1 to $SSCONF."

  echo "Installing sample apps..."

  if [ ! -e /srv/shiny-server/index.html ]; then
    ln -s /opt/shiny-server/samples/welcome.html /srv/shiny-server/index.html
    echo "Created /srv/shiny-server/index.html"
  else
    echo "/srv/shiny-server/index.html already exists. Not overwriting."
  fi

  if [ ! -e /srv/shiny-server/sample-apps ]; then
    ln -s /opt/shiny-server/samples/sample-apps /srv/shiny-server/sample-apps
    echo "Created /srv/shiny-server/sample-apps/"
  else
    echo "/srv/shiny-server/sample-apps already exists. Not overwriting."
  fi

  echo "Done installing samples."

  restart_shiny
}

if [ -f $SSCONF ]; then
  read -p "Configuration file already exists at /etc/shiny-server/shiny-server.conf. Are you sure you want to overwrite it? [yN]" -n 1 -r
  echo
  if [[ $REPLY =~ ^[Yy]$ ]]; then
    copy_config $FILE
  else
    echo "Not overwriting existing file. Exiting."
    exit 1
  fi
else
  copy_config $FILE
fi

/opt/shiny-server/bin/node

#!/bin/sh

dir=`dirname "$0"`
exec "$dir/../ext/node/bin/node" "[email protected]"

/opt/shiny-server/bin/npm

#!/bin/sh

dir=`dirname "$0"`
exec "$dir/../ext/node/bin/node" "$dir/../ext/node/lib/node_modules/npm/bin/npm-cli.js" "[email protected]"

 

 

 

 

Categories: R Basic

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